Structure of PDB 3qjp Chain A

Receptor sequence
>3qjpA (length=240) Species: 53953 (Pyrococcus horikoshii) [Search protein sequence]
HMRIEVKLLPLKDNPILPFNYNYEVYSQILEKVNSIEPTIAKLLSSPHGF
WTFSRIIVRKRKILPDKGIEILSDDVSLYISSSNEDIIRAIAEAVEKSPE
FKIGELSFLVGDIKAIKVKELGKENVFSTLSPIVVRTVKFEGNKLRHWDL
YPHDELFMDRLRKVMILRYSEVMGETPKDRDFTIEVLKFKPTRLMVGSSY
IRGSLMVFRYAGSEEIARFGYENGFGEKTGLGFGMVKLIE
3D structure
PDB3qjp Cooperative and Specific Binding of a RAMP Protein to Single-stranded CRISPR Repeat RNA
ChainA
Resolution3.2986 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A F18 R54 V57 R60 P64 I68 W147 D148 K187 K189 P190 T191 R192 R201 L204 M205 V206 F19 R55 V58 R61 P65 I69 W148 D149 K188 K190 P191 T192 R193 R202 L205 M206 V207
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0016788 hydrolase activity, acting on ester bonds
Biological Process
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:3qjp, PDBe:3qjp, PDBj:3qjp
PDBsum3qjp
PubMed
UniProtO58088|CAS6L_PYRHO Putative CRISPR-associated endoribonuclease-like protein Cas6nc (Gene Name=cas6nc)

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