Structure of PDB 3pmk Chain A

Receptor sequence
>3pmkA (length=404) Species: 582817 (Recombinant vesicular stomatitis Indiana virus rVSV-G/GFP) [Search protein sequence]
GAMEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIH
VNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLP
DGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMIN
EQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTI
VSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEI
DKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQ
PDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNA
PPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKS
EFDK
3D structure
PDB3pmk Structure of the Vesicular Stomatitis Virus N0-P Complex
ChainA
Resolution3.03 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Q347 F348 C349 G351 Q329 F330 C331 G333
BS02 peptide A M149 Y152 R221 F222 K223 L228 A229 G232 H233 T242 E243 M262 L263 P264 Q266 I268 D269 R312 M131 Y134 R203 F204 K205 L210 A211 G214 H215 T224 E225 M244 L245 P246 Q248 I250 D251 R294
Gene Ontology
Cellular Component
GO:0005737 cytoplasm
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:3pmk, PDBe:3pmk, PDBj:3pmk
PDBsum3pmk
PubMed21960769
UniProtB7UCZ2

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