Structure of PDB 3omc Chain A

Receptor sequence
>3omcA (length=217) Species: 9606 (Homo sapiens) [Search protein sequence]
SYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAP
RRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNV
EHLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLN
AQESAKSARLNLWRYGD
3D structure
PDB3omc Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain.
ChainA
Resolution1.77 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.31.1: micrococcal nuclease.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A F686 Q699 V701 G704 T705 E708 F740 Y746 Y763 Y766 N768 N823 F6 Q19 V21 G24 T25 E28 F60 Y66 Y83 Y86 N88 N143
External links
PDB RCSB:3omc, PDBe:3omc, PDBj:3omc
PDBsum3omc
PubMed20937909
UniProtQ7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 (Gene Name=SND1)

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