Structure of PDB 3oca Chain A

Receptor sequence
>3ocaA (length=179) Species: 205920 (Ehrlichia chaffeensis str. Arkansas) [Search protein sequence]
SVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQ
VGVHKRILVMNVPEENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKE
GCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLN
GTVFLKYLSKFKRDFAIEKVKKKERTDLI
3D structure
PDB3oca Crystal structure of peptide deformylase from Ehrlichia chaffeensis
ChainA
Resolution2.4 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C111 L112 H153 E154 H157
Catalytic site (residue number reindexed from 1) G45 Q50 C102 L103 H144 E145 H148
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C111 H153 H157 C102 H144 H148
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3oca, PDBe:3oca, PDBj:3oca
PDBsum3oca
PubMed
UniProtQ2GI30

[Back to BioLiP]