Structure of PDB 3lfm Chain A

Receptor sequence
>3lfmA (length=420) Species: 9606 (Homo sapiens) [Search protein sequence]
PRGSHMTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKH
GCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKAEIA
AACETFLKLNDYLQIETIQALEELAADEVDIKSRAAYNVTLLNFMDPQKM
PYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGRDPDIWHVGFK
ISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAE
CSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVE
FEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREV
EQRNEILTAILASLTARQNLRREWHARCQSRIARTPADQKPECRPYWEKD
DASMPLPFDLTDIVSELRGQ
3D structure
PDB3lfm Crystal structure of the FTO protein reveals basis for its substrate specificity
ChainA
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.14.11.-
1.14.11.53: mRNA N(6)-methyladenine demethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 3DT A R96 Y108 L109 V228 H231 H232 D233 E234 R71 Y83 L84 V166 H169 H170 D171 E172
BS02 FE2 A H231 D233 H307 H169 D171 H232
Gene Ontology
Molecular Function
GO:0008198 ferrous iron binding
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0016740 transferase activity
GO:0035515 oxidative RNA demethylase activity
GO:0035516 broad specificity oxidative DNA demethylase activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
GO:1990931 mRNA N6-methyladenosine dioxygenase activity
GO:1990984 tRNA demethylase activity
Biological Process
GO:0001659 temperature homeostasis
GO:0006307 DNA alkylation repair
GO:0010883 regulation of lipid storage
GO:0016180 snRNA processing
GO:0040014 regulation of multicellular organism growth
GO:0042245 RNA repair
GO:0044065 regulation of respiratory system process
GO:0060612 adipose tissue development
GO:0061157 mRNA destabilization
GO:0070350 regulation of white fat cell proliferation
GO:0090335 regulation of brown fat cell differentiation
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016607 nuclear speck
GO:0043231 intracellular membrane-bounded organelle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3lfm, PDBe:3lfm, PDBj:3lfm
PDBsum3lfm
PubMed20376003
UniProtQ9C0B1|FTO_HUMAN Alpha-ketoglutarate-dependent dioxygenase FTO (Gene Name=FTO)

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