Structure of PDB 3kyf Chain A

Receptor sequence
>3kyfA (length=231) Species: 160488 (Pseudomonas putida KT2440) [Search protein sequence]
PQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRSHRFQSYVVHVDRESN
TLALDEMIPRDGEKFIENGEHFRVEGFHDGVRIAWECDHALKISEVDGHR
CYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAHLKGNGAMRGKLLD
ISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTMVELRHLHYEER
INTTFAGVRFHNLSGQAQRKIESFVYQLQRE
3D structure
PDB3kyf Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.
ChainA
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 5GP A R127 H201 R120 H194 PDBbind-CN: -logKd/Ki=6.78,Kd=165.0nM
BS02 5GP A F84 G87 Q121 R122 R123 F77 G80 Q114 R115 R116 PDBbind-CN: -logKd/Ki=6.78,Kd=165.0nM
BS03 5GP A R127 D157 T161 G162 C163 K164 R200 H201 G214 V215 R216 R120 D150 T154 G155 C156 K157 R193 H194 G207 V208 R209 PDBbind-CN: -logKd/Ki=6.78,Kd=165.0nM
BS04 5GP A R122 R123 N124 R127 R115 R116 N117 R120 PDBbind-CN: -logKd/Ki=6.78,Kd=165.0nM
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0035438 cyclic-di-GMP binding
Biological Process
GO:0071945 regulation of bacterial-type flagellum-dependent cell motility by regulation of motor speed
GO:0071973 bacterial-type flagellum-dependent cell motility
Cellular Component
GO:0009288 bacterial-type flagellum
GO:0009425 bacterial-type flagellum basal body

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Cellular Component
External links
PDB RCSB:3kyf, PDBe:3kyf, PDBj:3kyf
PDBsum3kyf
PubMed20226196
UniProtQ88EQ6|YCGR_PSEPK Flagellar brake protein YcgR (Gene Name=ycgR)

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