Structure of PDB 3iel Chain A

Receptor sequence
>3ielA (length=431) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPK
EVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKV
MDEPFFGPEDVEEALGHLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVA
QGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRET
VREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLD
SPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKAL
NRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAE
IIARPPAVRILGEEVPLRASVHTLGGFSGHAGQDELLDWLQGEPRVVLVH
GEEEKLLALGKLLALRGQEVSLARFGEGVPV
3D structure
PDB3iel Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
ChainA
Resolution2.35 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 U5P A V12 T188 Y189 R227 G340 Y341 S378 G379 V12 T188 Y189 R227 G340 Y341 S378 G379
BS02 U5P A R2 V4 L20 R25 G426 G428 R2 V4 L20 R25 G426 G428
BS03 U5P A E91 R263 E91 R263
BS04 ZN A D63 H64 D162 H400 D63 H64 D162 H400
BS05 ZN A H61 H141 H61 H141
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3iel, PDBe:3iel, PDBj:3iel
PDBsum3iel
PubMed
UniProtQ5SLP1|RNSE_THET8 Ribonuclease TTHA0252 (Gene Name=TTHA0252)

[Back to BioLiP]