Structure of PDB 3goc Chain A

Receptor sequence
>3gocA (length=228) Species: 227882 (Streptomyces avermitilis MA-4680 = NBRC 14893) [Search protein sequence]
TTVRIPAGWPATEEEARAVQDELRGRVILDEPGPPPGTGRVTGVDVAYDD
ERDVVVAAAVVLDAATLDVVAEATAVGEVSFPYVPGLLAFREIPTVLAAL
DALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNPFTFSYE
DPGAPRGSAAPLLAGADEVGRALRTQSGVKPVFVSVGHRVDLDHACAHTL
ALTPKYRIPETTRRADSLCRRALKEATA
3D structure
PDB3goc Crystal structure of the Endonuclease V (SAV1684) from Streptomyces avermitilis. Northeast Structural Genomics Consortium Target SvR196.
ChainA
Resolution1.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.21.7: deoxyribonuclease V.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A D46 D217 D45 D216
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003727 single-stranded RNA binding
GO:0004519 endonuclease activity
GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters
GO:0043737 deoxyribonuclease V activity
GO:0046872 metal ion binding
Biological Process
GO:0006281 DNA repair
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3goc, PDBe:3goc, PDBj:3goc
PDBsum3goc
PubMed
UniProtQ82MH6|NFI_STRAW Endonuclease V (Gene Name=nfi)

[Back to BioLiP]