Structure of PDB 3gnb Chain A

Receptor sequence
>3gnbA (length=68) Species: 10090 (Mus musculus) [Search protein sequence]
GGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKEEGGDVKAVCLTLFLLA
LRARNEHRQADELEAIMQ
3D structure
PDB3gnb Structure of the RAG1 nonamer binding domain with DNA reveals a dimer that mediates DNA synapsis.
ChainA
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A G390 R391 P392 K405 R409 G2 R3 P4 K17 R21
BS02 dna A G390 R391 R393 Q394 L399 T400 R402 A403 R407 G2 R3 R5 Q6 L11 T12 R14 A15 R19
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0043565 sequence-specific DNA binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0033151 V(D)J recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:3gnb, PDBe:3gnb, PDBj:3gnb
PDBsum3gnb
PubMed19396172
UniProtP15919|RAG1_MOUSE V(D)J recombination-activating protein 1 (Gene Name=Rag1)

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