Structure of PDB 3gmo Chain A

Receptor sequence
>3gmoA (length=268) Species: 10090 (Mus musculus) [Search protein sequence]
NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQG
KLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEM
YPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGT
SATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSHRQLVCHVSGF
YPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLAC
RVKHSSLGGQDIILYWGS
3D structure
PDB3gmo Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands.
ChainA
Resolution1.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FUC A S114 W129 G130 S108 W123 G124
BS02 C8F A C12 L13 Q14 Y73 D80 L84 L100 A102 W133 D153 G155 T156 C6 L7 Q8 Y67 D74 L78 L94 A96 W127 D147 G149 T150
External links
PDB RCSB:3gmo, PDBe:3gmo, PDBj:3gmo
PDBsum3gmo
PubMed19732779
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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