Structure of PDB 3gmn Chain A

Receptor sequence
>3gmnA (length=268) Species: 10090 (Mus musculus) [Search protein sequence]
NYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQG
KLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCEM
YPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGT
SATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSHRQLVCHVSGF
YPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLAC
RVKHSSLGGQDIILYWGS
3D structure
PDB3gmn Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands.
ChainA
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FUC A S114 W129 G130 S108 W123 G124
BS02 C1Q A C12 Q14 Y73 S76 D80 A102 V118 F120 W133 L143 D153 G155 T156 T159 C6 Q8 Y67 S70 D74 A96 V112 F114 W127 L137 D147 G149 T150 T153
External links
PDB RCSB:3gmn, PDBe:3gmn, PDBj:3gmn
PDBsum3gmn
PubMed19732779
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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