Structure of PDB 3g6v Chain A

Receptor sequence

>3g6vA (length=373) Species: 9606 (Homo sapiens)

ASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLG
VKKLMNVRDAKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLG
FDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLL
VGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPE
SCQHLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELG
ISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEEL
LASLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQVMTP
MVDILMKLFRNMTLLSVCFCNLK

3D structure

• PDB: 3g6v DNA Synthesis across an Abasic Lesion by Human DNA Polymerase iota
• Chain: A
• Resolution: 2.2 Å

Enzymatic activity

• Enzyme Commision number: 2.7.7.7: DNA-directed DNA polymerase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	A	E127 K207 G243 Y244 K245 T246 E358 S359	E103 K183 G219 Y220 K221 T222 E334 S335
BS02	dna	A	Q59 K60 E97 L99 R103 Q300 S301 S303 E304 E305 S307 R347	Q35 K36 E73 L75 R79 Q276 S277 S279 E280 E281 S283 R323
BS03	ATP	A	L35 C37 F38 Y39 T65 Y68 R71 K77 D126 K214	L11 C13 F14 Y15 T41 Y44 R47 K53 D102 K190
BS04	MG	A	D34 L35 D126	D10 L11 D102
BS05	MG	A	D34 E127	D10 E103

Gene Ontology

Molecular Function

• GO:0003684 damaged DNA binding
• GO:0003887 DNA-directed DNA polymerase activity

Biological Process

• GO:0006281 DNA repair

External links

• PDB: RCSB:3g6v, PDBe:3g6v, PDBj:3g6v
• PDBsum: 3g6v
• PubMed: 19368886
• UniProt: Q9UNA4|POLI_HUMAN DNA polymerase iota (Gene Name=POLI)