Structure of PDB 3fax Chain A

Receptor sequence

>3faxA (length=771) Species: 342616 (Streptococcus agalactiae COH1)

VQLKDAQQTDLTSIQASFTTLDGVDKTEILKELKVTDKQNAIQISDITLD
TSKSLLIIKGDFNPKQGHFNISYNNNVTTRQSWEFKDQLYAYSGNLGAVL
NQDGSKVEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVWQTIL
DTKLGIKNYTGYYYLYEIKRGDKVKILDPYAKSLAEWDSNTVNDDIKTAK
AAFVNPSQLGPQNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSLDGKNQL
GTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNY
NWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVY
NHTAKTYLFEDIEPNYYHFMNEDGSPRESFGGGRLGTTHAMSRRVLVDSI
KYLTSEFKVDGFRFDMMGDHDAAAIELAYKEAKAINPNMIMIGEGWRTFQ
GDQGKPVKPADQDWMKSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQ
SLQGIFKNIKAQPGNFEADSPGDVVQYIAAHDNLTLHDVIAKSINKDPKV
AEEDIHRRLRLGNVMILTSQGTAFIHSGQEYGRTKRLLNPDYMTKVSDKL
PNKATLIEAVKEYPYFIHDSYDSSDAINHFDWAAATDNNKHPISTKTQAY
TAGLITLRRSTDAFRKLSKAEIDREVSLITEVGQGDIKEKDLVIAYQTID
SGDIYAVFVNADSKARNVLLGEKYKHLLKGQVIVDADQAGIKPISTPRGV
HFEKDSLLIDPLTAIVIKVGK

3D structure

• PDB: 3fax Group B Streptococcus pullulanase crystal structures in the context of a novel strategy for vaccine development
• Chain: A
• Resolution: 2.4 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	GLC	A	W833 D863 R866	W446 D476 R479
BS02	GLC	A	D919 N920	D532 N533
BS03	CA	A	K510 Y547 K708	K126 Y163 K321
BS04	CA	A	N685 Y687 D1010	N298 Y300 D622
BS05	CA	A	M852 T855 D856 D906 D910	M465 T468 D469 D519 D523

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Nov 25 18:16:20 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '3fax', asym_id = 'A', title = 'Group B Streptococcus pullulanase crystal struct...ntext of a novel strategy for vaccine development'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='3fax', asym_id='A', title='Group B Streptococcus pullulanase crystal struct...ntext of a novel strategy for vaccine development')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0004553,0005975', uniprot = '', pdbid = '3fax', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975', uniprot='', pdbid='3fax', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>