Structure of PDB 3dxh Chain A

Receptor sequence
>3dxhA (length=124) Species: 9913 (Bos taurus) [Search protein sequence]
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHES
LADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTT
QANKHIIVACEGNPYVPVHFDASV
3D structure
PDB3dxh Inhibitor design to Ribonuclease A: The binding of two 5'phosphate uridine analogues
ChainA
Resolution1.4 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H12 K41 H119 F120 D121
Catalytic site (residue number reindexed from 1) H12 K41 H119 F120 D121
Enzyme Commision number 4.6.1.18: pancreatic ribonuclease.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 UDP A H12 K41 V43 N44 T45 H119 F120 H12 K41 V43 N44 T45 H119 F120 PDBbind-CN: -logKd/Ki=3.19,Ki=0.65mM
BindingDB: Ki=647000nM
BS02 UDP A C65 N67 Q69 N71 A109 E111 V118 H119 C65 N67 Q69 N71 A109 E111 V118 H119 PDBbind-CN: -logKd/Ki=3.19,Ki=0.65mM
BindingDB: Ki=647000nM
BS03 UDP A Y76 H105 Y76 H105 PDBbind-CN: -logKd/Ki=3.19,Ki=0.65mM
BindingDB: Ki=647000nM
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004519 endonuclease activity
GO:0004522 ribonuclease A activity
GO:0004540 RNA nuclease activity
GO:0005515 protein binding
GO:0016829 lyase activity
Biological Process
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3dxh, PDBe:3dxh, PDBj:3dxh
PDBsum3dxh
PubMed
UniProtP61823|RNAS1_BOVIN Ribonuclease pancreatic (Gene Name=RNASE1)

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