Structure of PDB 3dnt Chain A

Receptor sequence
>3dntA (length=415) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
PKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRGN
ITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAV
TLIPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTA
LLRIGNDWCIPKGITPTTHIIKLPIQSVDNEYYCLLLAKELGLNVPDAEI
IKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGG
PGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGATQGHAKNFSVFIQAG
GSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPR
HFLATAKVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAV
ESNVLRLHGRLSREY
3D structure
PDB3dnt Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB.
ChainA
Resolution1.66 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP A V98 A152 G153 A154 Q155 K157 I179 K181 R235 F236 D237 H311 Y331 D332 V97 A143 G144 A145 Q146 K148 I170 K172 R213 F214 D215 H289 Y309 D310 MOAD: Kd=18uM
PDBbind-CN: -logKd/Ki=4.74,Kd=18uM
BS02 MG A N314 D332 N292 D310
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0000976 transcription cis-regulatory region binding
GO:0001217 DNA-binding transcription repressor activity
GO:0003677 DNA binding
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0043565 sequence-specific DNA binding
GO:0044024 histone H2AS1 kinase activity
GO:0106310 protein serine kinase activity
Biological Process
GO:0006338 chromatin remodeling
GO:0006355 regulation of DNA-templated transcription
GO:0016310 phosphorylation
GO:0022611 dormancy process
GO:0040008 regulation of growth
GO:0044010 single-species biofilm formation
GO:0045892 negative regulation of DNA-templated transcription
GO:0046677 response to antibiotic
Cellular Component
GO:0005829 cytosol
GO:0032993 protein-DNA complex
GO:0110001 toxin-antitoxin complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3dnt, PDBe:3dnt, PDBj:3dnt
PDBsum3dnt
PubMed19150849
UniProtP23874|HIPA_ECOLI Serine/threonine-protein kinase toxin HipA (Gene Name=hipA)

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