Structure of PDB 3dmg Chain A

Receptor sequence
>3dmgA (length=371) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
LTREAYHRLTPLPHPGGRLFIKPGARGYRDPVHDLLQKTVEPFGERALDL
NPGVGWGSLPLEGRMAVERLETSRAAFRCLTASGLQARLALPWEAAAGAY
DLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKGFERYFKEA
RALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARILGAEYTFHH
LPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLA
RMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDII
VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEE
KFGAFQTLKVAEYKVLFAEKR
3D structure
PDB3dmg Crystal Structure of the Thermus thermophilus 16 S rRNA Methyltransferase RsmC in Complex with Cofactor and Substrate Guanosine.
ChainA
Resolution1.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SAH A F207 S216 G241 A242 A246 E262 D263 S287 V289 N305 V318 F322 F205 S214 G239 A240 A244 E260 D261 S285 V287 N303 V316 F320
Gene Ontology
Molecular Function
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0003676 nucleic acid binding
GO:0008168 methyltransferase activity
GO:0008170 N-methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
Biological Process
GO:0000154 rRNA modification
GO:0008033 tRNA processing
GO:0031167 rRNA methylation
GO:0032259 methylation
GO:0043414 macromolecule methylation

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Molecular Function
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Biological Process
External links
PDB RCSB:3dmg, PDBe:3dmg, PDBj:3dmg
PDBsum3dmg
PubMed18667428
UniProtQ5SKW0

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