Structure of PDB 3dah Chain A

Receptor sequence
>3dahA (length=290) Species: 320372 (Burkholderia pseudomallei 1710b) [Search protein sequence]
DGLMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGK
DVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRP
RSARVAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPI
LLGDLRKQNYPDLLVVSPDVGGVVRARALAKQLNCDLAIEGRTCVIMDDM
VDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDELVVT
DTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSL
3D structure
PDB3dah Combining functional and structural genomics to sample the essential Burkholderia structome.
ChainA
Resolution2.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.6.1: ribose-phosphate diphosphokinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP A R99 Q100 H134 R95 Q96 H130
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004749 ribose phosphate diphosphokinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process
GO:0006164 purine nucleotide biosynthetic process
GO:0009156 ribonucleoside monophosphate biosynthetic process
GO:0009165 nucleotide biosynthetic process
GO:0016310 phosphorylation
GO:0044249 cellular biosynthetic process
Cellular Component
GO:0002189 ribose phosphate diphosphokinase complex
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3dah, PDBe:3dah, PDBj:3dah
PDBsum3dah
PubMed23382856
UniProtQ63XL8|KPRS_BURPS Ribose-phosphate pyrophosphokinase (Gene Name=prs)

[Back to BioLiP]