Structure of PDB 3ch1 Chain A

Receptor sequence
>3ch1A (length=274) Species: 10090 (Mus musculus) [Search protein sequence]
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAP
WMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSG
CDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQS
GAAEHYKAYLEGECVEWLHRYLKNGNLLRTDSPKAHVTHHPRSKGEVTLR
CWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLG
KEQNYTCRVYHEGLPEPLTLRWEP
3D structure
PDB3ch1 Design of agonistic altered peptides for the robust induction of CTL directed towards H-2Db in complex with the melanoma-associated epitope gp100.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 R62 E63 K66 Q70 W73 V76 S77 Y84 L95 Q97 S99 T143 K146 W147 S150 G151 A152 H155 Y156 Y159 W167 Y171 Y7 R62 E63 K66 Q70 W73 V76 S77 Y84 L95 Q97 S99 T143 K146 W147 S150 G151 A152 H155 Y156 Y159 W167 Y171
External links
PDB RCSB:3ch1, PDBe:3ch1, PDBj:3ch1
PDBsum3ch1
PubMed19789338
UniProtP01899|HA11_MOUSE H-2 class I histocompatibility antigen, D-B alpha chain (Gene Name=H2-D1)

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