Structure of PDB 3bpc Chain A

Receptor sequence

>3bpcA (length=216) Species: 10090 (Mus musculus) [Search protein sequence]

DIVMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSP
KLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVYYCKQSYNL
RTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN
VKWKIDGSEGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATH
KTSTSPIVKSFNRNEC

3D structure

PDB

3bpc Exploration of specificity in germline monoclonal antibody recognition of a range of natural and synthetic epitopes.

Chain

Resolution

1.85 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	KDA	A	S91 R95	S97 R101	PDBbind-CN: -logKd/Ki=4.80,Kd=16uM
BS02	KDB	A	N30A R30C	N31 R33	PDBbind-CN: -logKd/Ki=4.80,Kd=16uM
BS03	ZN	A	D150 H188	D156 H191
BS04	MG	A	E184 H188	E187 H191

External links

PDB	RCSB:3bpc, PDBe:3bpc, PDBj:3bpc
PDBsum	3bpc
PubMed	18272175

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