Structure of PDB 2yxl Chain A

Receptor sequence
>2yxlA (length=443) Species: 70601 (Pyrococcus horikoshii OT3) [Search protein sequence]
KKLSIPPKGIRAIIEAIRLGEIIKPSQYAKREAFKKHDVEEAWLNRVLTM
IFYDIMKKQGLIDKVIKEIVGVTPLILDPWLRAALRVAVDIALFHDPSSQ
TIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKY
LAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGEL
EEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVL
DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVK
RMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWR
LREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL
NVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEK
3D structure
PDB2yxl Structure of an archaeal homologue of the bacterial Fmu/RsmB/RrmB rRNA cytosine 5-methyltransferase
ChainA
Resolution2.55 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SFG A A267 A268 A269 P270 G271 G272 K273 D291 V292 R296 A319 D337 P339 A262 A263 A264 P265 G266 G267 K268 D286 V287 R291 A314 D332 P334
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0008168 methyltransferase activity
GO:0008173 RNA methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0016428 tRNA (cytidine-5-)-methyltransferase activity
GO:0016740 transferase activity
Biological Process
GO:0001510 RNA methylation
GO:0006396 RNA processing
GO:0030488 tRNA methylation
GO:0032259 methylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:2yxl, PDBe:2yxl, PDBj:2yxl
PDBsum2yxl
PubMed21123870
UniProtO58581

[Back to BioLiP]