Structure of PDB 2ypf Chain A

Receptor sequence

>2ypfA (length=675) Species: 339 (Xanthomonas campestris) [Search protein sequence]

AFTHAHIVALSQHPAALATVAVKYQDMIAALPEATHEAIVAVAKQWSGAR
ALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP
LNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG
GKQALETVQRLLPVLCQAHGLTPEQVVAIASNIGGKQALETVQALLPVLC
QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN
IGGKQALETVQALLPVLCQAHGLTPEQVVAIASNIGGKQALETVQALLPV
LCQAHGLTPEQVVAIASNIGGKQALETVQALLPVLCQAHGLTPEQVVAIA
SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL
PVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA
IASNIGGKQALETVQALLPVLCQAHGLTPEQVVAIASNIGGKQALETVQA
LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV
VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETV
QRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAAGLTPE
QVVAIASHDGGKQALETVQRLLPVL

3D structure

PDB

2ypf Structure of the Avrbs3-DNA Complex Provides New Insights Into the Initial Thymine-Recognition Mechanism

Chain

Resolution

2.55 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	A	R266 V269 D301 Q305 G336 Q339 I369 Q407 I437 Q441 I471 G472 Q475 I505 Q509 D539 Q543 D573 Q577 Q611 I641 G642 I675 G676 Q679 D709 K712 Q713 D743 G744 Q747 G778 Q781 K814 Q815 K848 Q849	R80 V83 D115 Q119 G150 Q153 I183 Q221 I251 Q255 I285 G286 Q289 I319 Q323 D353 Q357 D387 Q391 Q425 I455 G456 I489 G490 Q493 D523 K526 Q527 D557 G558 Q561 G592 Q595 K628 Q629 K662 Q663	PDBbind-CN: Kd=78nM

External links

PDB	RCSB:2ypf, PDBe:2ypf, PDBj:2ypf
PDBsum	2ypf
PubMed	23999294
UniProt	Q3ZD73

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