Structure of PDB 2ydp Chain A

Receptor sequence
>2ydpA (length=361) Species: 5518 (Fusarium graminearum) [Search protein sequence]
QKGKTFSNVEIFDPPTNYRDPQVLYARPLELSDGTLLGTWENYSPEPPNV
WFPIVKSKDGGKTWKEISKVKDTQNNWGLRYQPQLYELPRAFGKYPKGTV
LCSGSSIPSDLSETLIEVYASRDKGYTWEFVSHVALGGEALPNPGLTPVW
EPFLMTYKEKLILYYSDQRDNATHSQKLVHQTTTDLKKWSKVVDDTKYAN
YYARPGMPTVAKLPNNEYIYVYAYGGGPNPPAGSDYWFPVYYRLSKDPQK
FLNKAHHQIVSNDGTTPAGSPYVVWTPYGGKNGTIVVSCGTRSEIFTNQA
LGDASAWKKWDVPQPTAYTRSLLTFQKDPDLLMIMGAGILPPAGGKNTVS
ASVVRLSEVMK
3D structure
PDB2ydp Alpha-L-Arabinofuranosylated Pyrrolidines as Arabinanase Inhibitors.
ChainA
Resolution1.85 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.55: non-reducing end alpha-L-arabinofuranosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 EDG A P161 W169 E170 Q195 M226 P142 W150 E151 Q176 M207
BS02 AHR A E60 Q101 E41 Q82
BS03 CA A D32 P33 D13 P14
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046556 alpha-L-arabinofuranosidase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:2ydp, PDBe:2ydp, PDBj:2ydp
PDBsum2ydp
PubMed21773614
UniProtB8ZY56

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