Structure of PDB 2vsr Chain A

Receptor sequence
>2vsrA (length=257) Species: 9606 (Homo sapiens) [Search protein sequence]
ESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLM
MGEDKIKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLL
KYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKF
EFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALE
LQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL
LQEIYKD
3D structure
PDB2vsr Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
ChainA
Resolution2.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 9HO A C285 R288 S289 H323 L330 V339 L353 F363 M364 H449 Y473 C67 R70 S71 H105 L112 V121 L135 F145 M146 H231 Y255 BindingDB: Kd=2000nM
BS02 9HO A F226 P227 L228 R288 E295 M329 L330 L333 I341 S342 E343 F20 P21 L22 R70 E77 M111 L112 L115 I123 S124 E125 BindingDB: Kd=2000nM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004879 nuclear receptor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2vsr, PDBe:2vsr, PDBj:2vsr
PDBsum2vsr
PubMed19172745
UniProtP37231|PPARG_HUMAN Peroxisome proliferator-activated receptor gamma (Gene Name=PPARG)

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