Structure of PDB 2vmd Chain A

Receptor sequence
>2vmdA (length=252) Species: 366501 (Dictyostelium discoideum AX2) [Search protein sequence]
GSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSESWSSS
VLDKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVNWVEY
NNGEIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWELYALP
VKSYSNPSVQVGEVSIGDRSLNSGTGSRTIVRHVKFPVEFLSVPIVSIGC
KKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNNAVYDLTFDYVAVEF
NN
3D structure
PDB2vmd Structure Determination of Discoidin II from Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain.
ChainA
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A N39 S40 D47 N34 S35 D42
BS02 MBG A Q216 R218 W238 Q211 R213 W233 MOAD: Kd=0.95mM
PDBbind-CN: -logKd/Ki=3.02,Kd=0.95mM
Gene Ontology
Molecular Function
GO:0016936 galactoside binding
GO:0030246 carbohydrate binding
GO:0030247 polysaccharide binding
GO:0046871 N-acetylgalactosamine binding
GO:0046872 metal ion binding
GO:0070492 oligosaccharide binding
Biological Process
GO:0007010 cytoskeleton organization
GO:0007155 cell adhesion
GO:0009617 response to bacterium
GO:0098609 cell-cell adhesion
GO:0140582 adenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0009986 cell surface
GO:0031012 extracellular matrix
GO:0031160 spore wall
GO:0031982 vesicle
GO:0045335 phagocytic vesicle
GO:0098636 protein complex involved in cell adhesion

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Cellular Component
External links
PDB RCSB:2vmd, PDBe:2vmd, PDBj:2vmd
PDBsum2vmd
PubMed18384150
UniProtP42530|DIS2_DICDI Discoidin-2 (Gene Name=dscE)

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