Structure of PDB 2vdi Chain A

Receptor sequence
>2vdiA (length=465) Species: 3055 (Chlamydomonas reinhardtii) [Search protein sequence]
AGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEE
GSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERD
KLNKYGRGLLGCTIKPKLGLSAKNYGRAVYESLRGGLDFTKDDENVNSQP
FMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKEL
GVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIH
FRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSR
GIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHP
WGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACE
VWKEIKFEFDTIDKL
3D structure
PDB2vdi Structural and Functional Consequences of the Replacement of Proximal Residues Cys-172 and Cys-192 in the Large Subunit of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Chlamydomonas Reinhardtii
ChainA
Resolution2.65 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K175 K201 D202 D203 E204 H294 H327 K334
Catalytic site (residue number reindexed from 1) K165 K191 D192 D193 E194 H284 H317 K324
Enzyme Commision number 4.1.1.39: ribulose-bisphosphate carboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A K201 D203 E204 K191 D193 E194
BS02 CAP A T173 K175 K201 D203 E204 H294 R295 H327 K334 L335 S379 G380 G403 G404 T163 K165 K191 D193 E194 H284 R285 H317 K324 L325 S369 G370 G393 G394
BS03 CAP A T65 N123 T55 N113
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004497 monooxygenase activity
GO:0016829 lyase activity
GO:0016984 ribulose-bisphosphate carboxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0009853 photorespiration
GO:0015977 carbon fixation
GO:0015979 photosynthesis
GO:0019253 reductive pentose-phosphate cycle
Cellular Component
GO:0009507 chloroplast

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Cellular Component
External links
PDB RCSB:2vdi, PDBe:2vdi, PDBj:2vdi
PDBsum2vdi
PubMed18072944
UniProtP00877|RBL_CHLRE Ribulose bisphosphate carboxylase large chain (Gene Name=rbcL)

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