Structure of PDB 2vbm Chain A

Receptor sequence
>2vbmA (length=509) Species: 10761 (Lederbergvirus Sf6) [Search protein sequence]
GPDLIEQLAQSGKYSQDNTKGDAMIGVKQPLPKAVLRTQHDKNKEAISIL
DFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLL
IPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNT
CNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQA
GTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAV
RSEAIILDSETMCIGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENVNG
GFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAA
NNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRY
LRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGA
TSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSGVTINVTRPSPVGVAL
PSMVEYLAI
3D structure
PDB2vbm An Intersubunit Active Site between Supercoiled Parallel Beta Helices in the Trimeric Tailspike Endorhamnosidase of Shigella Flexneri Phage Sf6.
ChainA
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.2.1.-
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 RAM A A203 R230 E293 A90 R117 E180
BS02 MN A D135 H153 D22 H40
External links
PDB RCSB:2vbm, PDBe:2vbm, PDBj:2vbm
PDBsum2vbm
PubMed18462681
UniProtQ9XJP3|FIBER_BPSFV Tail spike protein

[Back to BioLiP]