Structure of PDB 2v6i Chain A

Receptor sequence
>2v6iA (length=421) Species: 44024 (Kokobera virus) [Search protein sequence]
RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEAL
RGEPIRYMGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASV
AARGYIETRVSMGDAGAIFMTATPPGTTEAFPPSNSPIIDEETRIPDKAW
NSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEY
PKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPI
AITPASAAQRRGRIGRNPEKLGDIYAYSGNVSSDNEGHVSWTEARMLLDN
VHVQGGVVAQLYTPEREKTEAYEGEFKLKTNQRKVFSELIRTGDLPVWLA
FQVASANVEYHDRKWCFDGPNEHLLLENNQEIEVWTRQGQRRVLKPRWLD
GRITSDHLNLKSFKEFASGKR
3D structure
PDB2v6i Structure and Biochemical Analysis of Kokobera Virus Helicase
ChainA
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.1.1.56: mRNA (guanine-N(7))-methyltransferase.
2.1.1.57: methyltransferase cap1.
2.7.7.48: RNA-directed RNA polymerase.
3.4.21.91: flavivirin.
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 POP A P11 G12 G14 K15 R273 R276 P10 G11 G13 K14 R263 R266
Gene Ontology
Molecular Function
GO:0004386 helicase activity
GO:0005524 ATP binding

View graph for
Molecular Function
External links
PDB RCSB:2v6i, PDBe:2v6i, PDBj:2v6i
PDBsum2v6i
PubMed18004778
UniProtQ32ZD5|POLG_KOKV Genome polyprotein

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