Structure of PDB 2v5d Chain A

Receptor sequence
>2v5dA (length=722) Species: 1502 (Clostridium perfringens) [Search protein sequence]
VLVPNLNPTPENLEVVGDGFKITSSINLVGEEEADENAVNALREFLTANN
IEINSENDPNSTTLIIGEVDDDIPELDEALNGTTAENLKEEGYALVSNDG
KIAIEGKDGDGTFYGVQTFKQLVKESNIPEVNITDYPTVSARGIVEGFYG
TPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWESEMQRMQELINA
SAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITKAESLYDMGVRSFAIY
WDDIQDKSAAKHAQVLNRFNEEFVKAKGDVKPLITVPTEYDTGAMVSNGQ
PRAYTRIFAETVDPSIEVMWTGPGVVTNEIPLSDAQLISGIYNRNMAVWW
NYPVTDYFKGKLALGPMHGLDKGLNQYVDFFTVNPMEHAELSKISIHTAA
DYSWNMDNYDYDKAWNRAIDMLYGDLAEDMKVFANHSTRMDNKTWAKSGR
EDAPELRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPE
VALEECSRQLDELITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLN
TALSSFAVISEKVAQSFIQEALSFDLTLINPRTVKITASSEETSGENAPA
SFASDGDMNTFWHSKWSSPAHEGPHHLTLELDNVYEINKVKYAPRQDSKN
GRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEFDSVDAKYVRLDVTD
SVSDQANGRGKFATAAEVNVHG
3D structure
PDB2v5d Portrait of an Enzyme: A Complete Structural Analysis of a Multi-Modular Beta-N-Acetylglucosaminidase from Clostridium Perfringens
ChainA
Resolution3.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) N67 Y335
Catalytic site (residue number reindexed from 1) N27 Y290
Enzyme Commision number 3.2.1.169: protein O-GlcNAcase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A E557 A597 S600 A602 V603 E512 A552 S555 A557 V558
BS02 CA A E73 E108 D111 E33 E68 D71
BS03 CA A F647 D652 T655 A761 E762 F602 D607 T610 A716 E717
External links
PDB RCSB:2v5d, PDBe:2v5d, PDBj:2v5d
PDBsum2v5d
PubMed19193644
UniProtQ0TR53|OGA_CLOP1 O-GlcNAcase NagJ (Gene Name=nagJ)

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