Structure of PDB 2v2b Chain A

Receptor sequence
>2v2bA (length=272) Species: 562 (Escherichia coli) [Search protein sequence]
QNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQ
QPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAG
YHILWGLTNEAVPTSSLPAHFLSHCERIKATNGKDRVIMHCHATNLIALT
YVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDAIGQATAQEM
QKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMGQTI
SAAELIALGKRFGVTPLASALA
3D structure
PDB2v2b Antenna Domain Mobility and Enzymatic Reaction of L-Rhamnulose-1-Phosphate Aldolase.
ChainA
Resolution1.5 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) S117 H141 H143 E171 H212
Catalytic site (residue number reindexed from 1) S116 H140 H142 E170 H211
Enzyme Commision number 4.1.2.19: rhamnulose-1-phosphate aldolase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A H141 H143 H212 H140 H142 H211
BS02 ZN A E200 H204 E199 H203
BS03 PO4 A S75 G76 T115 S116 S74 G75 T114 S115
Gene Ontology
Molecular Function
GO:0008994 rhamnulose-1-phosphate aldolase activity
GO:0016829 lyase activity
GO:0016830 carbon-carbon lyase activity
GO:0016832 aldehyde-lyase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0005996 monosaccharide metabolic process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019323 pentose catabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2v2b, PDBe:2v2b, PDBj:2v2b
PDBsum2v2b
PubMed18085797
UniProtP32169|RHAD_ECOLI Rhamnulose-1-phosphate aldolase (Gene Name=rhaD)

[Back to BioLiP]