Structure of PDB 2uyh Chain A

Receptor sequence

>2uyhA (length=327) Species: 726 (Haemophilus haemolyticus)

MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE
MNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSIQGKQKGFEDSRGTL
FFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAK
VLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDS
EVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGSGERIYSTRGIAIT
LSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYK
QFGNSVVINVLQYIAYNIGSSLNFKPY

3D structure

• PDB: 2uyh HhaI DNA Methyltransferase S87Q-Q237S Mutant Complex with 13mer Gcgc-Gmgc Oligonucleotide and Sah
• Chain: A
• Resolution: 2.63 Å

Enzymatic activity

• Catalytic site (original residue number in PDB): C81 E119 R163 R165
• Catalytic site (residue number reindexed from 1): C81 E119 R163 R165
• Enzyme Commision number: 2.1.1.37: DNA (cytosine-5-)-methyltransferase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	A	D42 K43 Y44 I86 Q87 Q90 N123 S126 K234 S237 E239 G256 G257 I258 S294 S296 Q297	D42 K43 Y44 I86 Q87 Q90 N123 S126 K234 S237 E239 G256 G257 I258 S294 S296 Q297
BS02	dna	A	F79 C81 Q82 S85 I86 Q87 G88 K89 R97 E119 V121 K162 R163 R165 R228 S237 R240 Y242 T250 A253 Y254 G255 G256 N304	F79 C81 Q82 S85 I86 Q87 G88 K89 R97 E119 V121 K162 R163 R165 R228 S237 R240 Y242 T250 A253 Y254 G255 G256 N304
BS03	SAH	A	F18 A19 L21 G23 E40 W41 D60 I61 G78 N304 S305	F18 A19 L21 G23 E40 W41 D60 I61 G78 N304 S305

Gene Ontology

Molecular Function

• GO:0003677 DNA binding
• GO:0003886 DNA (cytosine-5-)-methyltransferase activity
• GO:0008168 methyltransferase activity

Biological Process

• GO:0009307 DNA restriction-modification system
• GO:0032259 methylation

External links

• PDB: RCSB:2uyh, PDBe:2uyh, PDBj:2uyh
• PDBsum: 2uyh
• UniProt: P05102|MTH1_HAEPH Type II methyltransferase M.HhaI (Gene Name=hhaIM)