Structure of PDB 2rib Chain A

Receptor sequence
>2ribA (length=150) Species: 9606 (Homo sapiens) [Search protein sequence]
SLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFT
EAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFT
YPTGESLVYSNWAPGEPNDDGGSEDCVEIFTNGKWNDRACGEKRLVVCEF
3D structure
PDB2rib Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d.
ChainA
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A E321 N323 E329 N341 D342 E116 N118 E124 N136 D137
BS02 CA A D297 E301 D324 E329 D330 D92 E96 D119 E124 D125
BS03 CA A E301 D330 E96 D125
BS04 GMH A E321 N323 D325 E329 N341 E116 N118 D120 E124 N136 PDBbind-CN: -logKd/Ki=2.82,IC50=1.5mM
External links
PDB RCSB:2rib, PDBe:2rib, PDBj:2rib
PDBsum2rib
PubMed18092821
UniProtP35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D (Gene Name=SFTPD)

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