Structure of PDB 2pbk Chain A

Receptor sequence
>2pbkA (length=228) Species: 37296 (Human gammaherpesvirus 8) [Search protein sequence]
QGLYVGGFVDVVSCPKLEQELYLDPDQVTDYLPVTEPLPITIEHLPETEV
GWTLGLFQVSHGIFCTGAITSPAFLELASRLADTSHVARAPVKNLPKEPL
LEILHTWLPGLSLSSIHPRELSQTPSGPVFQHVSLCALGRRRGTVAVYGH
DAEWVVSRFSSVSKSERAHILQHVSSCRLEDLSTPNFVSPLETLMAKAID
AGFIRDRLDLLKTDRGVASILSPVYLKA
3D structure
PDB2pbk Substrate modulation of enzyme activity in the herpesvirus protease family.
ChainA
Resolution1.73 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H46 S114 S116 H134 R142 R143
Catalytic site (residue number reindexed from 1) H44 S112 S114 H132 R140 R141
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A H46 S114 L115 S116 S117 I118 H119 P130 G141 R142 H44 S112 L113 S114 S115 I116 H117 P128 G139 R140
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:2pbk, PDBe:2pbk, PDBj:2pbk
PDBsum2pbk
PubMed17870089
UniProtQ2HRB6|SCAF_HHV8P Capsid scaffolding protein (Gene Name=ORF17)

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