Structure of PDB 2okl Chain A

Receptor sequence
>2oklA (length=185) Species: 226900 (Bacillus cereus ATCC 14579) [Search protein sequence]
HMLTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEM
AEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSV
ERTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAI
VFQHEIDHLNGVMFYDHINKENPFAAPDDSKPLER
3D structure
PDB2okl Characterization of Peptide Deformylase2 from B. cereus
ChainA
Resolution1.7 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G60 Q65 C110 L111 H153 E154 H157
Catalytic site (residue number reindexed from 1) G61 Q66 C111 L112 H154 E155 H158
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C110 H153 H157 C111 H154 H158
BS02 BB2 A R56 G58 I59 G60 Q65 L104 G107 E108 G109 C110 L111 I149 V150 H153 E154 H157 R57 G59 I60 G61 Q66 L105 G108 E109 G110 C111 L112 I150 V151 H154 E155 H158
BS03 BB2 A Q105 L182 R184 Q106 L183 R185
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0043686 co-translational protein modification

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Molecular Function
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Biological Process
External links
PDB RCSB:2okl, PDBe:2okl, PDBj:2okl
PDBsum2okl
PubMed18047803
UniProtQ819K2|DEF2_BACCR Peptide deformylase 2 (Gene Name=def2)

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