Structure of PDB 2mnz Chain A
Receptor sequence
>2mnzA (length=55) Species:
9606
(Homo sapiens) [
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AVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPK
CLAQE
3D structure
PDB
2mnz
The PHD1 finger of KDM5B recognizes unmodified H3K4 during the demethylation of histone H3K4me2/3 by KDM5B.
Chain
A
Resolution
N/A
3D
structure
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Enzymatic activity
Enzyme Commision number
1.14.11.67
: [histone H3]-trimethyl-L-lysine(4) demethylase.
Interaction with ligand
Site
#
Ligand
Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01
peptide
A
V307 D308 S317 G318 N319 E321 L324 L325 L326 D328 P347 G349 W351
V2 D3 S12 G13 N14 E16 L19 L20 L21 D23 P42 G44 W46
BS02
ZN
A
C312 C315 H335 C338
C7 C10 H30 C33
BS03
ZN
A
C330 D331 C353 C356
C25 D26 C48 C51
External links
PDB
RCSB:2mnz
,
PDBe:2mnz
,
PDBj:2mnz
PDBsum
2mnz
PubMed
24952722
UniProt
Q9UGL1
|KDM5B_HUMAN Lysine-specific demethylase 5B (Gene Name=KDM5B)
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