Structure of PDB 2kmk Chain A

Receptor sequence

>2kmkA (length=82) Species: 10116 (Rattus norvegicus) [Search protein sequence]

SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF
IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG

3D structure

PDB

2kmk Solution structure of Gfi-1 zinc domain bound to consensus DNA.

Chain

Resolution

N/A

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	A	R13 T16 I23 H40 Q41 D44 I51 K65 Q69 K79	R13 T16 I23 H40 Q41 D44 I51 K65 Q69 K79	PDBbind-CN: Kd=0.26nM
BS02	dna	A	R13 S15 S70 S71 I74	R13 S15 S70 S71 I74	PDBbind-CN: Kd=0.26nM
BS03	ZN	A	C4 C7 H20 H24	C4 C7 H20 H24
BS04	ZN	A	C32 C35 H48 H52	C32 C35 H48 H52
BS05	ZN	A	C60 C63 H76 H80	C60 C63 H76 H80

External links

PDB	RCSB:2kmk, PDBe:2kmk, PDBj:2kmk
PDBsum	2kmk
PubMed	20153336
UniProt	Q07120\|GFI1_RAT Zinc finger protein Gfi-1 (Gene Name=Gfi1)