Structure of PDB 2hvs Chain A

Receptor sequence
>2hvsA (length=319) Species: 10665 (Tequatrovirus T4) [Search protein sequence]
SMFKKYSSLENHYNSKFIEKLYSLGLTGGEWVAREKIHGTNFSLIIERDK
VTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGE
FAGPGIQKNVDYGDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTFKFKM
APLLGRGKFEELIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNAEAKGE
VFTAEGYVLKPCYPSWLRNGNRVAIKCKNSKFELSEADNKLVGILACYVT
LNRVNNVISKIGEIGPKDFGKVMGLTVQDILEETSREGITLTQADNPSLI
KKELVKMVQDVLRPAWIEL
3D structure
PDB2hvs RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward.
ChainA
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.5.1.3: RNA ligase (ATP).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A F66 G104 K107 N218 F67 G105 K108 N219
BS02 dna A T39 N40 K54 R55 T56 T40 N41 K55 R56 T57
BS03 AMP A Y5 K35 I36 N40 E99 F119 V207 K225 K227 Y6 K36 I37 N41 E100 F120 V208 K226 K228
Gene Ontology
Molecular Function
GO:0003972 RNA ligase (ATP) activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0042245 RNA repair

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Molecular Function
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Biological Process
External links
PDB RCSB:2hvs, PDBe:2hvs, PDBj:2hvs
PDBsum2hvs
PubMed17018278
UniProtP32277|RLIG2_BPT4 RNA ligase 2 (Gene Name=Y10A)

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