Structure of PDB 2fpk Chain A

Receptor sequence
>2fpkA (length=299) Species: 2188 (Methanococcus voltae) [Search protein sequence]
LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIM
GARDLCDLGFKSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFA
GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF
RPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNN
IKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLV
TNQVSGHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGIQD
3D structure
PDB2fpk Crystal Structure of Methanococcus Voltae Rada in Complex with Adp: hydrolysis-induced conformational change
ChainA
Resolution2.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A Q98 D246 Q94 D242
BS02 ADP A F107 G108 G110 K111 T112 Q113 R158 T316 E317 F103 G104 G106 K107 T108 Q109 R154 T293 E294
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0003684 damaged DNA binding
GO:0005524 ATP binding
GO:0008094 ATP-dependent activity, acting on DNA
GO:0016887 ATP hydrolysis activity
GO:0042802 identical protein binding
GO:0140664 ATP-dependent DNA damage sensor activity
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0006974 DNA damage response

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Molecular Function
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Biological Process
External links
PDB RCSB:2fpk, PDBe:2fpk, PDBj:2fpk
PDBsum2fpk
PubMed16229465
UniProtO73948|RADA_METVO DNA repair and recombination protein RadA (Gene Name=radA)

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