Structure of PDB 2e84 Chain A

Receptor sequence
>2e84A (length=513) Species: 883 (Nitratidesulfovibrio vulgaris str. 'Miyazaki F') [Search protein sequence]
KPLPGSTGEQRADLVEIGVMAKFGNLELPKVTFPHDRHSEAVAKVAAPGK
ECATCHKNDDKGKMSLKFMRLEDTTAADLKNIYHANCIGCHTEQAKAGKK
TGPQDGECRSCHNPKPMASSWKQIGLDKSLHFRHVAAKAIAPVNDPQKNC
GACHHVYDEAAKKLSWVKNKEDSCRACHGDARVEKKPSLREAAHTQCITC
HRSVAAAPAKADSGPVSCAGCHDPAMQAKFKVVRDVPRLERGQPDAAMVL
PVVGPGAKKGMKGAMKPVAFNHKVHEAASNTCRACHHVKIDNCTTCHTLE
GVKDGNFVQIEKAMHQPDSMKSCVGCHNQKVQAPACAGCHGFMKTGAKPQ
PEAACGVCHADPVGMDAKTVADGGLLKATKEQRADVAAATLAARRTTKGT
LPADDIPEFVTIGVLSDKYEPSKLPHRKIVNTLMAAIGDDKLAGTFHTDK
ATVCAGCHHNSPASKTPPKCASCHGQDRPGLKAAYHQQCMGCHNRMKLEP
ADTACAECHKERA
3D structure
PDB2e84 Structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F)
ChainA
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A E415 D419 E381 D385
BS02 ZN A H534 E540 E549 H493 E499 E507
BS03 ZN A H320 I324 D325 H286 I290 D291
BS04 HEM A F64 H66 H69 C83 C86 H87 K98 F99 R101 Y114 R221 H225 I229 F33 H35 H38 C52 C55 H56 K67 F68 R70 Y83 R190 H194 I198
BS05 HEM A F64 R68 H69 F99 C118 C121 H122 Q125 K131 T132 G133 P134 F33 R37 H38 F68 C87 C90 H91 Q94 K100 T101 G102 P103
BS06 HEM A I48 G49 M51 L57 E58 L59 V62 K111 Y114 H115 D136 C139 C142 H143 I17 G18 M20 L26 E27 L28 V31 K80 Y83 H84 D105 C108 C111 H112
BS07 HEM A G156 L157 H162 H165 N180 C181 C184 H185 E202 S204 C205 L270 T315 C316 R317 G125 L126 H131 H134 N149 C150 C153 H154 E171 S173 C174 L239 T281 C282 R283
BS08 HEM A K94 H185 H186 L195 D203 C205 C208 H209 K216 K217 P218 T226 Q227 K63 H154 H155 L164 D172 C174 C177 H178 K185 K186 P187 T195 Q196
BS09 HEM A L157 L161 R164 H165 I171 C184 Q227 C228 C231 H232 D243 S244 G245 P246 F261 L126 L130 R133 H134 I140 C153 Q196 C197 C200 H201 D212 S213 G214 P215 F230
BS10 HEM A H66 Q154 I155 R206 L220 R221 A224 H225 H232 V247 S248 C249 C252 H253 H35 Q123 I124 R175 L189 R190 A193 H194 H201 V216 S217 C218 C221 H222
BS11 HEM A Q274 P275 F304 H306 H309 S313 C316 C319 H320 I324 D325 N326 C327 T328 Q243 P244 F270 H272 H275 S279 C282 C285 H286 I290 D291 N292 C293 T294
BS12 HEM A C319 H320 H321 V322 C327 C330 H331 G339 A347 S353 K355 C285 H286 H287 V288 C293 C296 H297 G305 A313 S319 K321
BS13 HEM A F304 H309 C319 C357 C360 H361 R428 K475 L476 T479 F270 H275 C285 C323 C326 H327 R394 K441 L442 T445
BS14 HEM A V365 C370 C373 H374 M377 Q384 P385 I471 D474 L476 F480 H481 T486 V487 A489 V331 C336 C339 H340 M343 Q350 P351 I437 D440 L442 F446 H447 T452 V453 A455
BS15 HEM A V280 L281 P282 G297 A298 M299 V302 M348 H349 C357 H361 Q384 C389 C392 H393 V249 L250 P251 G263 A264 M265 V268 M314 H315 C323 H327 Q350 C355 C358 H359
BS16 HEM A I440 V444 L458 H460 C488 C491 H492 P501 K503 C504 Y526 I406 V410 L424 H426 C454 C457 H458 P467 K469 C470 Y485
BS17 HEM A F376 K378 H493 N494 C504 C507 H508 P520 A525 Q529 F342 K344 H459 N460 C470 C473 H474 P479 A484 Q488
BS18 HEM A L458 P459 K462 I463 T466 C530 C533 H534 L539 C550 L424 P425 K428 I429 T432 C489 C492 H493 L498 C508
BS19 HEM A I446 G447 L449 S450 D451 K452 Y453 K523 Y526 H527 C530 M531 C547 C550 H551 I412 G413 L415 S416 D417 K418 Y419 K482 Y485 H486 C489 M490 C505 C508 H509
Gene Ontology
Molecular Function
GO:0009055 electron transfer activity
GO:0020037 heme binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:2e84, PDBe:2e84, PDBj:2e84
PDBsum2e84
PubMed
UniProtQ8VUI3

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