Structure of PDB 2def Chain A

Receptor sequence
>2defA (length=146) Species: 562 (Escherichia coli) [Search protein sequence]
VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQV
DIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS
3D structure
PDB2def Solution structure of nickel-peptide deformylase.
ChainA
ResolutionN/A
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G45 Q50 C90 L91 H132 E133 H136
Catalytic site (residue number reindexed from 1) G44 Q49 C89 L90 H131 E132 H135
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NI A C90 I93 H132 H136 C89 I92 H131 H135
Gene Ontology
Molecular Function
GO:0042586 peptide deformylase activity

View graph for
Molecular Function
External links
PDB RCSB:2def, PDBe:2def, PDBj:2def
PDBsum2def
PubMed9665852
UniProtP0A6K3|DEF_ECOLI Peptide deformylase (Gene Name=def)

[Back to BioLiP]