Structure of PDB 2dcf Chain A

Receptor sequence
>2dcfA (length=384) Species: 239 (Flavobacterium sp.) [Search protein sequence]
STGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAAVSRRPGH
ALARLGAIAAQLPDLEQRLEQTYTDAFLVLRGTEVVAEYYRAGFAPDDRH
LLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVL
DMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDG
STGEFQYCSANTDVLAWIVERVTGLRYVEALSTYLWAKLDADRDATITVD
TTGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGS
HEAMTDKGFTNTFPDGSYTRQWWCTGNERGNVSGIGIHGQNLWLDPLTDS
VIVKLSSWPDPDTEHWHRLQNGILLDVSRALDAV
3D structure
PDB2dcf Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase
ChainA
Resolution1.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.5.1.46: 6-aminohexanoate-oligomer exohydrolase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ACA A A112 Y170 Y215 I345 A104 Y162 Y207 I337
BS02 ACA A A112 Y170 D181 F264 N266 G344 I345 A104 Y162 D173 F256 N258 G336 I337
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0019875 6-aminohexanoate-dimer hydrolase activity
Biological Process
GO:0019876 nylon catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:2dcf, PDBe:2dcf, PDBj:2dcf
PDBsum2dcf
PubMed17512009
UniProtP07062|NYLB2_PAEUR 6-aminohexanoate-dimer hydrolase (Gene Name=nylB')

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