Structure of PDB 2d3y Chain A

Receptor sequence
>2d3yA (length=219) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MDREAFVQTLTACRLCPRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPE
ARILLFGLAPGAHGSNRTGRPFTGDASGAFLYPLLHEAGLSSKPESLPGD
DLRLYGVYLTAAVRCAPPKNKPTPEELRACARWTEVELGLLPEVRVYVAL
GRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQTGR
LTREMFLEVLMEAKRLAGL
3D structure
PDB2d3y Crystal structure of family 5 uracil-DNA glycosylase bound to DNA.
ChainA
Resolution1.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 A C13 L15 C16 P42 C115 C130 W133 C13 L15 C16 P42 C115 C130 W133
BS02 DU A F46 G47 D48 R103 L104 F46 G47 D48 R103 L104
Gene Ontology
Molecular Function
GO:0004844 uracil DNA N-glycosylase activity
GO:0016787 hydrolase activity
GO:0033958 DNA-deoxyinosine glycosylase activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding
GO:0097506 deaminated base DNA N-glycosylase activity
Biological Process
GO:0006281 DNA repair
GO:0006284 base-excision repair

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Molecular Function
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Biological Process
External links
PDB RCSB:2d3y, PDBe:2d3y, PDBj:2d3y
PDBsum2d3y
PubMed17870091
UniProtQ5SJ65|UDGB_THET8 Type-5 uracil-DNA glycosylase (Gene Name=udgb)

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