Structure of PDB 2ay9 Chain A

Receptor sequence
>2ay9A (length=394) Species: 266 (Paracoccus denitrificans) [Search protein sequence]
MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVH
AAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGG
TGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAE
TRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEK
TGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE
RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPEL
RADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA
TPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV
3D structure
PDB2ay9 The active site of Paracoccus denitrificans aromatic amino acid aminotransferase has contrary properties: flexibility and rigidity.
ChainA
Resolution2.5 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) W140 D222 A224 K258
Catalytic site (residue number reindexed from 1) W127 D208 A210 K243
Enzyme Commision number 2.6.1.57: aromatic-amino-acid transaminase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP A G107 G108 T109 W140 N194 D222 A224 Y225 S255 S257 K258 R266 G99 G100 T101 W127 N180 D208 A210 Y211 S240 S242 K243 R251
BS02 5PV A W140 N142 N194 R386 W127 N129 N180 R371 MOAD: Kd=6.9mM
PDBbind-CN: -logKd/Ki=2.16,Kd=6.9mM
BS03 5PV A Y70 S296 F297 Y65 S281 F282 MOAD: Kd=6.9mM
PDBbind-CN: -logKd/Ki=2.16,Kd=6.9mM
Gene Ontology
Molecular Function
GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity
GO:0004838 L-tyrosine-2-oxoglutarate transaminase activity
GO:0008483 transaminase activity
GO:0008793 aromatic-amino-acid transaminase activity
GO:0030170 pyridoxal phosphate binding
GO:0042802 identical protein binding
GO:0080130 L-phenylalanine-2-oxoglutarate transaminase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0008652 amino acid biosynthetic process
GO:0009058 biosynthetic process
GO:0009073 aromatic amino acid family biosynthetic process
GO:0033585 L-phenylalanine biosynthetic process from chorismate via phenylpyruvate
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Cellular Component
External links
PDB RCSB:2ay9, PDBe:2ay9, PDBj:2ay9
PDBsum2ay9
PubMed9930977
UniProtP95468|TYRB_PARDE Aromatic-amino-acid aminotransferase (Gene Name=tyrB)

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