Structure of PDB 1zdg Chain A

Receptor sequence
>1zdgA (length=258) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKA
LEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVF
MDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLL
HVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA
FKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSMTHPQFLNVWWDIFTTS
VVPLLQQF
3D structure
PDB1zdg Requirements for catalysis in mammalian glycogenin.
ChainA
Resolution2.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.4.1.186: glycogenin glucosyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN A D101 D103 H211 D102 D104 H212
BS02 UPG A L8 T9 T10 Y14 D101 A102 D103 N132 S133 G134 Q163 H211 L213 L9 T10 T11 Y15 D102 A103 D104 N133 S134 G135 Q164 H212 L214
Gene Ontology
Molecular Function
GO:0008466 glycogenin glucosyltransferase activity
GO:0016740 transferase activity
GO:0016757 glycosyltransferase activity
GO:0030145 manganese ion binding
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
Biological Process
GO:0005978 glycogen biosynthetic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1zdg, PDBe:1zdg, PDBj:1zdg
PDBsum1zdg
PubMed15849187
UniProtP13280|GLYG_RABIT Glycogenin-1 (Gene Name=GYG1)

[Back to BioLiP]