Structure of PDB 1yny Chain A

Receptor sequence
>1ynyA (length=455) Species: 301298 (Bacillus sp. AR9) [Search protein sequence]
KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQGAEEIDATGCYVIPGGI
DPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAI
ATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAY
KNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDP
IYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREK
GWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALK
NGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVR
QGRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDADIVIFDPHVKRTLS
VETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKR
TTFEQ
3D structure
PDB1yny Molecular structure of D-hydantoinase from Bacillus sp. AR9: evidence for mercury inhibition.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.5.2.2: dihydropyrimidinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN A H58 H60 D315 H53 H55 D310
BS02 MN A H183 H239 H178 H234
Gene Ontology
Molecular Function
GO:0004157 dihydropyrimidinase activity
GO:0016787 hydrolase activity
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0046872 metal ion binding
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:1yny, PDBe:1yny, PDBj:1yny
PDBsum1yny
PubMed15733920
UniProtQ5DLU2

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