Structure of PDB 1vl8 Chain A

Receptor sequence
>1vl8A (length=251) Species: 243274 (Thermotoga maritima MSB8) [Search protein sequence]
FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT
EKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAE
EFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM
PNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSD
PEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWTA
N
3D structure
PDB1vl8 Crystal structure of Gluconate 5-dehydrogenase (TM0441) from Thermotoga maritima at 2.07 A resolution
ChainA
Resolution2.07 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G20 S146 I157 Y160 K164
Catalytic site (residue number reindexed from 1) G16 S142 I153 Y156 K160
Enzyme Commision number 1.1.1.69: gluconate 5-dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAP A G16 S18 R19 G20 L21 S40 R41 N42 C66 D67 V68 A94 A95 G96 I97 I144 S146 Y160 K164 P190 G191 Y193 T195 M197 T198 G12 S14 R15 G16 L17 S36 R37 N38 C62 D63 V64 A90 A91 G92 I93 I140 S142 Y156 K160 P186 G187 Y189 T191 M193 T194
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:1vl8, PDBe:1vl8, PDBj:1vl8
PDBsum1vl8
PubMed
UniProtQ9WYS2

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