Structure of PDB 1vkm Chain A

Receptor sequence
>1vkmA (length=292) Species: 243274 (Thermotoga maritima MSB8) [Search protein sequence]
KIHHHHHHVIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISR
EKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKN
AATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLV
SSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENV
EEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGK
EVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR
3D structure
PDB1vkm Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold.
ChainA
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.2.1.70: pseudouridylate synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN A H-4 H-2 H4 H6
BS02 MN A D226 E229 D234 E237
BS03 MN A E204 E206 E212 E214
Gene Ontology
Molecular Function
GO:0004730 pseudouridylate synthase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0016829 lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0001522 pseudouridine synthesis
GO:0046113 nucleobase catabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1vkm, PDBe:1vkm, PDBj:1vkm
PDBsum1vkm
PubMed15822122
UniProtQ9X1H5|PSUG_THEMA Pseudouridine-5'-phosphate glycosidase (Gene Name=psuG)

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