Structure of PDB 1vd5 Chain A

Receptor sequence
>1vd5A (length=377) Species: 84635 (Bacillus sp. GL1) [Search protein sequence]
MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGI
LWLCYEYTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQ
WIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDC
LLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPE
NGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMA
RHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESD
PERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYT
IWGDYYYLEALLRLERGVTGYWYERGR
3D structure
PDB1vd5 Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
ChainA
Resolution1.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.2.1.179: gellan tetrasaccharide unsaturated glucuronosyl hydrolase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLY A W42 D149 R221 W225 W42 D149 R221 W225
BS02 GLY A G320 R334 R335 G320 R334 R335
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0052757 chondroitin hydrolase activity
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1vd5, PDBe:1vd5, PDBj:1vd5
PDBsum1vd5
PubMed15148314
UniProtQ9RC92|UGL_BACGL Unsaturated glucuronyl hydrolase (Gene Name=ugl)

[Back to BioLiP]