Structure of PDB 1pb0 Chain A

Receptor sequence
>1pb0A (length=236) Species: 562 (Escherichia coli) [Search protein sequence]
MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHH
WHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGF
HEPVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAK
HQVALEINFLHSNCREVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKIL
DAVDFPPERILNVSPRRLLNFLESRGMAPIAEFADL
3D structure
PDB1pb0 Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site.
ChainA
Resolution1.95 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.1.3.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A H15 H40 H164 H194 H15 H40 H161 H185
BS02 ZN A H7 H9 E73 D192 H7 H9 E73 D183
BS03 ZN A E73 H101 H131 E73 H101 H131
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity
GO:0042578 phosphoric ester hydrolase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0071978 bacterial-type flagellum-dependent swarming motility
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1pb0, PDBe:1pb0, PDBj:1pb0
PDBsum1pb0
PubMed
UniProtP75914|YCDX_ECOLI Probable phosphatase YcdX (Gene Name=ycdX)

[Back to BioLiP]