Structure of PDB 1p6v Chain A

Receptor sequence
>1p6vA (length=125) Species: 63363 (Aquifex aeolicus) [Search protein sequence]
SDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFV
RIENGEAWLYNLYIAPYKHANHDPLRKRKLLLHKREIMRLYGKVQEKGYT
IIPLKLYWKNNKVKVLIALAKGKKL
3D structure
PDB1p6v Crystal structure of the transfer-RNA domain of transfer-messenger RNA in complex with SmpB
ChainA
Resolution3.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A E26 I29 V30 L31 V36 K37 R40 E58 H71 L86 L87 H88 K89 R90 K117 V118 K119 E24 I27 V28 L29 V34 K35 R38 E56 H69 L81 L82 H83 K84 R85 K112 V113 K114
BS02 rna A M93 R94 Y96 G97 K98 Q100 E101 M88 R89 Y91 G92 K93 Q95 E96
Gene Ontology
Biological Process
GO:0070929 trans-translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Cellular Component
External links
PDB RCSB:1p6v, PDBe:1p6v, PDBj:1p6v
PDBsum1p6v
PubMed12904796
UniProtO66640|SSRP_AQUAE SsrA-binding protein (Gene Name=smpB)

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