Structure of PDB 1p5w Chain A

Receptor sequence
>1p5wA (length=544) Species: 10788 (Canine parvovirus) [Search protein sequence]
GVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYRRVVVNN
MDKTAVRGNMALDDIHAQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSEL
HLVSFEQEIFNVVLKTVSEPPTKVYNNDLTASLMVALDSNNTMPFTPAAM
RSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNIYHGTDPDD
VQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPF
LNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSA
PYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGNPRYAFGRQHGQKTTT
TGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKT
GINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVC
QNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLR
ASHTWNPIQQMSINVDNQFNYVPSNIGGMKIVYEKSQLAPRKLY
3D structure
PDB1p5w Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants.
ChainA
Resolution3.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A F141 L177 S179 N180 N181 T182 Y244 T263 G264 F266 F267 N493 G496 F105 L137 S139 N140 N141 T142 Y204 T223 G224 F226 F227 N453 G456
BS02 MG A D237 D240 D197 D200
BS03 MG A D237 D239 D197 D199
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:1p5w, PDBe:1p5w, PDBj:1p5w
PDBsum1p5w
PubMed14581558
UniProtP17455|CAPSD_PAVCD Capsid protein VP1

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